Data and further information available upon request
2008
Beacham TD, Wetklo M, Wallace C, Olsen JB, Flannery BG, Wenburg JK, Templin WD, Antonovich A, Seeb LW (2008) The application of microsatellites for stock identification of Yukon River Chinook salmon. North American Journal of Fisheries Management 28, 283-295. DOI: 10.1577/M06-253.1
Kretschmer EJ, Olsen JB, and Wenburg JK (In Press) Characterization of eight microsatellite loci in Sea Otter, Enhydra lutris, and cross-species amplification in other Mustelidae. Conservation Genetics. DOI: 10.1007/s10592-008-9660-8
Metcalf JL, Siegle MR, Martin AP (2008) Hybridization dynamics between Colorado's native cutthroat trout and introduced rainbow trout.
Journal of Heredity, Published online January 30, 2008. DOI: 10.1093/jhered/esm118
Schlei OL, Crête-Lafrenière A, Whiteley AR, Brown RJ, Olsen JB, Bernatchez L, and Wenburg JK (In Press) DNA barcoding of eight North American coregonine species. Molecular Ecology Resources.
Whiteley AR, Hastings K, Wenburg JK, Frissell CA, Martin JC, Allendorf FW (In Review) Genetic variation and effective population size in historically isolated populations of coastal cutthroat trout. Molecular Ecology.
2007
Flannery BG, Wenburg JK, Gharrett AJ (2007) Evolution of mitochondrial DNA variation within and among Yukon River chum salmon populations. Transactions of the American Fisheries Society 136:902-910.
Flannery BG, Wenburg JK, Gharrett AJ (2007) Variation of amplified fragment length polymorphisms in Yukon River chum salmon: population structure and application to mixed-stock analysis. Transactions of the American Fisheries Society 136:911-925.
Seeb LW, Antonovich A, Banks MA, Beacham TD, Bellinger MR, Blankenship SM, Campbell MR, Decovich NA, Garza JC, Guthrie III CM, Lundrigan TA, Moran P, Narum SR, Stephenson JJ, Supernault KJ, Teel DJ, Templin WD, Wenburg JK, Young SF, Smith CT (2007) Development of a standardized DNA database for Chinook salmon. Fisheries 32, 540-552.
2006
Olsen JB, Miller SJ, Harper K, Nagler JJ, Wenburg JK (2006) Contrasting sex ratios in juvenile and adult Chinook salmon (Oncorhynchus tshawytscha) from southwest Alaska: sex reversal or differential survival? Journal of Fish Biology 69 (suppl. A), 140-144.
Olsen JB, Wuttig K, Fleming D, Kretschmer EJ, Wenburg JK (2006) Evidence of partial anadromy and resident-form dispersal bias on a fine scale in populations of Oncorhynchus mykiss. Conservation Genetics 7, 613-619.
2005
Bromaghin JF, Crane PA. (2005) A method to bin alleles of genetic loci that maintains population heterogeneity. Canadian Journal of Fisheries and Aquatic Sciences 62, 1570-1579.
Oleinik AG, Skurikhina LA, Brykov VA, Crane PA, Wenburg JK (2005) Differentiation of Dolly Varden char Salvelinus malma from Asia and North America inferred from PCR-RFLP analysis of mitochondrial DNA. Russian Journal of Genetics 41, 501-508.
2004
Crane PA, Lewis CJ, Kretschmer EJ, Miller SJ, Spearman WJ, DeCicco AL, Lisac MJ, Wenburg JK (2004) Characterization and inheritance of seven microsatellite loci from Dolly Varden, Salvelinus malma, and cross-species amplification in Arctic char, S. alpinus. Conservation Genetics 5, 737-741.
Flannery BG (2004) Application of molecular markers to mixed-stock analysis of Yukon River fall chum salmon. M.S. Thesis, University of Alaska Fairbanks 89 pp.
Habicht C, Olsen JB, Fair L, Seeb JE (2004) Smaller effective population sizes evidenced by loss of microsatellite alleles in tributary-spawning populations of sockeye salmon from the Kvichak River, Alaska drainage. Environmental Biology of Fishes 69, 51-62.
Hendry AP, Morbey YE, Berg OK, Wenburg JK (2004) Adaptive variation in senescence: reproductive life span in a wild salmon population. Proceedings of the Royal Society of London 271, 259-266.
Olsen JB, Habicht C, Reynolds J, Seeb JE (2004) Moderately and highly polymorphic microsatellites provide discordant estimates of population divergence in sockeye salmon (Oncorhynchus nerka). Environmental Biology of Fishes 69, 261-273.
Olsen JB, Spearman WJ, Sage GK, Miller SJ, Flannery B, Wenburg JK (2004) Variation in the population structure of Yukon River chum and coho salmon: evaluating the potential impact of localized habitat degradation. Transactions of the American Fisheries Society 133, 476-483.
Sato S, Kojima H, Ando J, Ando H, Wilmot RL, Seeb LW, Efremov V, LeClair L, Buchholz W, Jin D, Urawa S, Kaeriyama M, Urano A, Abe S (2004) Genetic population structure of chum salmon in the Pacific Rim inferred from mitochondrial DNA sequence variation. Environmental Biology of Fishes 69, 37-50.
Seeb LW, Crane PA, Kondzela CM, Wilmot RL, Urawa S, Varnavskaya N, Seeb JE (2004) Migration of Pacific Rim chum salmon on the high seas: insights from genetic data. Environmental Biology of Fishes 69, 21-36.
2003
Banks MA, Eichert W, Olsen JB (2003) Which genetic loci have the greater population assignment power? Bioinformatics 19, 1436-1438.
Olsen JB, Miller SJ, Spearman WJ, Wenburg JK (2003) Patterns of intra- and inter-population genetic diversity in Alaskan coho salmon: Implications for conservation. Conservation Genetics 4, 557-569.
Ramstad KM, Foote CJ, Olsen J, Rogers D (2003) Genetic and phenotypic evidence of reproductive isolation between seasonal runs of sockeye salmon in Bear Lake, Alaska. Transactions of the American Fisheries Society 132, 997-1013.
2002
Hendry MA, Wenburg JK, Myers K, Hendry AP (2002) Genetic and phenotypic variation through the migratory season provides evidence for multiple populations of wild steelhead in the Dean River, British Columbia. Transactions of the American Fisheries Society 131, 418-434.
LaHood ES, Moran P, Olsen J, Grant WS, Park LK (2002) Microsatellite allele ladders in two species of Pacific salmon: preparation and field-test results. Molecular Ecology Notes 2, 187-190.
Olsen JB, Lewis CJ, Kretschmer EJ, Wilson SL, Seeb JE (2002) Characterization of 14 tetranucleotide microsatellite loci derived from Pacific herring. Molecular Ecology Notes 2, 101-103.
Olsen JB, Merkouris SE, Seeb JE (2002) An examination of spatial and temporal genetic variation in walleye pollock (Theragra chalcogramma) using allozyme, mitochondrial DNA, and microsatellite data. Fishery Bulletin 100, 752-764.
Seeb LW, Kretschmer EJ, Olsen JB, Templin WD, Jones KC, Grant WS (2002) Development of microsatellite loci in red king crab (Paralithodes camtschaticus). Molecular Ecology Notes 2, 137-138.
2001
Allendorf FW, Leary RF, Spruell P, Wenburg JK (2001) The problems with hybrids: setting conservation guidelines. Trends in Ecology and Evolution 16, 613-622.
Bentzen P, Olsen JB, McLean JE, Seamons TR, Quinn TP (2001) Kinship analysis of Pacific salmon: insights into mating, homing, and timing of reproduction. Journal of Heredity 92, 127-136.
Buchholz W, Miller SJ, Spearman WJ (2001) Isolation and characterization of chum salmon microsatellite loci and use across species. Animal Genetics 32, 162-165.
Cooney RT, Allen JR, Bishop MA Eslinger DL, Kline T, Norcross BL, McRoy CP, Milton J, Olsen J, Patrick V, Paul, Salmon D, Scheel D, Thomas GL, Vaughan SL, Willette TM (2001) Ecosystem controls of juvenile pink salmon (Oncorhynchus gorbuscha) and Pacific herring (Clupea pallasi) populations in Prince William Sound, Alaska. Fisheries Oceanography 10, 1-13.
Hendry AP, Wenburg JK, Bentzen P, Volk EC, Quinn TP (2001) Evolution of sockeye salmon ecotypes. Science [Response] 291, 251-252.
Hendry AP, Wenburg JK, Bentzen P, Volk EC, Quinn TP (2001) Examining evidence of reproductive isolation in sockeye salmon. Science [Response - Online publication only] 291, 1853a.
Olsen JB, Busack C, Britt J, Bentzen P (2001) The aunt and uncle effect: An empirical evaluation of the confounding influence of full sibs of parents on pedigree reconstruction. Journal of Heredity 92, 243-247.
Wenburg JK, Bentzen P (2001) Microgeographic population structure of the endangered coastal cutthroat trout (Oncorhynchus clarki clarki): genetic and behavioral evidence for restricted gene flow. Transactions of the American Fisheries Society 130, 1051-1069.
2000
Burger CV, Scribner KT, Spearman WJ, Swanton CO, Campton D (2000) Genetic contribution of three introduced life history forms of sockeye salmon to colonization of Frazer Lake, Alaska. Canadian Journal of Fisheries and Aquatic Sciences 57, 2096-2111.
Hendry AP, Wenburg JK, Bentzen P, Volk EC, Quinn TP (2000) Rapid evolution of reproductive isolation in the wild: evidence from introduced salmon. Science 290, 516-518.
Lindner KR, Seeb JE, Habicht C, Knudsen KL, Kretschmer E, Reedy DJ, Spruell P, Allendorf FW (2000) Gene centromere mapping of 312 loci in pink salmon by half-tetrad analysis. Genome 43,1-43.
Olsen JB, Bentzen P, Banks MA, Shaklee JB, Young S (2000) Microsatellites reveal population identity of individual pink salmon to allow supportive breeding of a population at risk of extinction. Transactions of the American Fisheries Society 129, 232-242.
Olsen JB, Wilson SL, Kretschmer EJ, Jones KC, Seeb JE (2000) Characterization of 14 tetranucleotide microsatellite loci derived from sockeye salmon. Molecular Ecology 9, 2155-2234.
Woody CA, Olsen J, Reynolds J, Bentzen P (2000) Temporal variation in phenotypic and genotypic traits in two sockeye salmon populations, Tustemena Lake, Alaska. Transactions of the American Fisheries Society 129, 1031-1043.
1999
Buchholz W, Miller SJ, Spearman WJ (1999) Manual DNA sequencing using fluorescent-labeled primers and a fluorescent scanner. BioTechniques 27, 646-648.
Krall BS, Bartelt BJ, Lewis CJ, Whitman DW (1999) Chemical defense in the stinkbug Cosmopepla bimaculata. Journal of Chemical Ecology 25, 2477-2494.
Krueger CC, Wilmot RL, Everett RJ (1999) Stock origins of Dolly Varden collected from Beaufort Sea coastal sites of Arctic Alaska and Canada. Transactions of the American Fisheries Society 128, 49-57.
Olsen JB (1999) Genetic interpretation of microsatellite polymorphism in Pacific Salmon: case studies in population genetics and kinship analysis. PhD thesis, University of Washington.
Seeb LW, Crane PA (1999) Allozymes and mitochondrial DNA discriminate Asian and North American populations of chum salmon in mixed-stock fisheries along the south coast of the Alaska Peninsula. Transactions American Fisheries Society 128, 88-103.
Seeb LW, Crane PA (1999) High genetic heterogeneity in chum salmon in Western Alaska, the contact zone between northern and southern lineages. Transactions American Fisheries Society 128, 58-87.
Spruell P, Pilgrim KL, Greene BA, Habicht C, Knudsen KL, Lindner KR, Olsen JB, Sage GK, Seeb JE, Allendorf FW (1999) Inheritance of nuclear DNA markers in gynogenetic haploid pink salmon. Journal of Heredity 90, 289-296.
Walker MP, Lewis CJ, Whitman DW (1999) Effects of males on the fecundity and fertility of female Romalea microptera grasshoppers. Journal of Orthopteran Research 8, 277-283.
1998
Foote CJ, Moore K, Stenberg K, Craig K, Wenburg JK, Wood CC (1998) Genetic differentiation in gill-raker number and length in sympatric anadromous and nonanadromous morphs of sockeye salmon (Oncorhynchus nerka). Environmental Biology of Fishes 54, 263-274.
Olsen JB, Bentzen P, Seeb JE (1998) Characterization of seven microsatellite loci derived from pink salmon. Molecular Ecology 7, 1087-1089.
Olsen JB, Seeb LW, Bentzen P, Seeb JE (1998) Genetic interpretation of broad-scale microsatellite polymorphism in odd-year pink salmon. Transactions of the American Fisheries Society 127, 535-550.
Scribner KT, Crane PA, Spearman WJ, Seeb LW (1998) DNA and allozyme markers provide concordant estimates of population differentiation: analyses of U.S. and Canadian populations of Yukon River fall-run chum salmon. Canadian Journal of Fisheries and Aquatic Sciences 55, 1748-1758.
Wenburg JK (1998) Coastal cutthroat trout (Oncorhynchus clarki clarki): genetic population structure, migration patterns, and life history traits. PhD thesis, University of Washington.
Wenburg JK, Bentzen P, Foote CJ (1998) Microsatellite analysis of genetic population structure in an endangered salmonid: the coastal cutthroat trout (Oncorhynchus clarki clarki). Molecular Ecology 7, 733-749.
1997
Burger CV, Spearman WJ, Cronin MA (1997) Genetic differentiation of sockeye salmon subpopulations from a geologically young Alaskan lake system. Transactions of the American Fisheries Society 126, 926-938.
Everett RJ, Wilmot RL, Krueger CC (1997) Population genetic structure of Dolly Varden char from Beaufort Sea drainages of northern Alaska and Canada. Pages 240-249 in J.B. Reynolds, editor. Fish Ecology in Arctic North America, American Fisheries Society Symposium 19.
1996
Olsen JB, Wenburg JK, Bentzen P (1996) Semiautomated multilocus genotyping of Pacific salmon (Oncorhynchus spp.) using microsatellites. Molecular Marine Biology and Biotechnology 5, 259-272.
Wenburg JK, Olsen JB, Bentzen P (1996) Multiplexed systems of microsatellites for genetic analysis in coastal cutthroat trout (Oncorhynchus clarki clarki) and steelhead (Oncorhynchus mykiss). Molecular Marine Biology and Biotechnology 5, 273-283.
1995
Wenburg JK, George GW (1995) Placement of visible implant tags in the anal fin of wild coastal cutthroat trout. North American Journal of Fisheries Management 15, 874-877.
1994
Adams NS, Spearman WJ, Burger CV, Currens KP, Schreck CB, Li HW (1994) Variation in mitochondrial DNA and allozymes discriminates early and late forms of Chinook salmon (Oncorhynchus tshawytscha) in the Kenai and Kasilof rivers, Alaska. Canadian Journal of Fisheries and Aquatic Sciences 51, 172-181.
Crane PA, Seeb LB, Seeb JE (1994) Genetic relationships among Salvelinus species inferred from allozyme data. Canadian Journal of Fisheries and Aquatic Sciences 51, 182-197.
Varnavskaya NV, Wood CC, Everett RJ (1994) Genetic variation in sockeye salmon (Oncorhynchus nerka) populations of Asia and North America. Canadian Journal of Fisheries and Aquatic Sciences 51, 132-146.
Varnavskaya NV, Wood CC, Everett RJ, Wilmot RL, Varnavsky VS, Midanaya VV, Quinn TP (1994) Genetic differentiation of subpopulations of sockeye salmon (Oncorhynchus nerka) within lakes of Alaska, British Columbia, and Kamchatka, Russia. Canadian Journal of Fisheries and Aquatic Sciences 51, 147-157.
Wilmot RL, Everett RJ, Spearman WJ, Baccus R, Varnavskaya NV, Putivkin SV (1994) Genetic stock structure of Western Alaska chum salmon and a comparison with Russian Far East stocks. Canadian Journal of Fisheries and Aquatic Sciences 51, 84-94.
1993
Cronin MA, Spearman WJ, Wilmot RL, Patton JC, Bickham JW (1993) Mitochondrial DNA variation in Chinook salmon (Oncorhynchus tshawytscha) and chum salmon (O. keta) detected by restriction enzyme analysis of polymerase chain reaction (PCR) products. Canadian Journal of Fisheries and Aquatic Sciences 50, 708-715.
